Atlantic Coast
Bellamy River
Berrys Brook
Chauncey Creek
Cocheco River
Gerrish Island Beds
Great Bay
Lamprey River South
Little Bay
Little Harbor/Back Channel
Lower Piscataqua River North
Lower Piscataqua River South
North Mill Pond
Odiorne Point Beds
Oyster River
Portsmouth Harbor
Sagamore Creek
Salmon Falls River
South Mill Pond
Spinney Creek
Spruce Creek
Squamscott River South
Sturgeon Creek
Upper Piscataqua River
Winnicut River
Lamprey River North South
Squamscott River